Processed Dataset

ICAT Registration

Register a processed dataset with ICAT

icat-store-processed --beamline id00 \
    --proposal id002207 \
    --path /data/visitor/.../PROCESSED_DATA/integrated_A12 \
    --dataset integrated \
    --sample mysample \
    --raw /data/visitor/.../RAW_DATA/collectionA/collectionA_dataset1 \
    --raw /data/visitor/.../RAW_DATA/collectionA/collectionA_dataset2 \
    -p FIELD1=value1 \
    -p FIELD2=value2

Warning

At least one –raw dataset needs to be provided for ICAT to accept it.

The equivalent in python (metadata is optional)

from pyicat_plus.client.main import IcatClient
from pyicat_plus.client import defaults

client = IcatClient(metadata_urls=defaults.METADATA_BROKERS)

metadata = {"FIELD1": "value1", "FIELD2": "value2"}

client.store_processed_data(
    beamline="id00",
    proposal="id002207",
    dataset="integrated",
    path="/data/visitor/.../PROCESSED_DATA/integrated_A12",
    raw=["/data/visitor/.../RAW_DATA/collectionA/collectionA_dataset1",
         "/data/visitor/.../RAW_DATA/collectionA/collectionA_dataset2",]
    metadata={...}
)

client.disconnect()